FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n01_input_shoot_ctrl_rep3_pol-ii.35100000093671.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n01_input_shoot_ctrl_rep3_pol-ii.35100000093671.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6205261
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA47900.06.576497645
GATCGGA60150.05.87308345
ACGTCTG9702.0399966E-85.79923145
TCGGAAG43550.05.580044745
AGATCGG67900.05.368344344
Produced by FastQC (version 0.11.2)