FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n01_input_root_ctrl_rep1_pol-ii.351000000936a8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n01_input_root_ctrl_rep1_pol-ii.351000000936a8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7342823
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTG20050.06.84559545
GCACACG47600.06.52330845
CACGTCT27150.06.46428545
CACACGT38350.05.984536645
GAGCACA63000.05.964467545
AGAGCAC70400.05.880861345
CGTCTGA18750.05.880178545
ACACGTC29750.05.596732644
GAAGAGC92100.05.4969145
AGCACAC57250.05.46297444
GATCGGA160800.05.26135445
TCGGAAG125100.05.162027445
Produced by FastQC (version 0.11.2)