FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n01_chip_shoot_ctrl_rep2_pol-ii.35100000093423.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n01_chip_shoot_ctrl_rep2_pol-ii.35100000093423.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14243100
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTGAA109450.08.20261745
CTGAACT87200.08.02489245
TCTGAAC95450.07.9206145
GAACTCC65500.07.90099545
CGTCTGA124400.07.6328645
ACGTCTG148450.07.123819445
TGAACTC75950.06.932249544
ACACGTC202850.06.14511545
CACGTCT173800.06.12359745
CACACGT228350.05.46862444
ACTCCAG40450.05.395708645
AACTCCA59400.05.15166645
Produced by FastQC (version 0.11.2)