FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n01_chip_shoot_ctrl_rep1_pol-ii.351000000933d1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n01_chip_shoot_ctrl_rep1_pol-ii.351000000933d1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7386598
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTGAA55700.08.16018845
TCTGAAC49400.07.74329845
AACTCCA30150.07.612317645
CGTCTGA62650.07.578188445
GAACTCC32400.07.29202745
TGAACTC43500.06.87965145
ACGTCTG74300.06.541373745
CTGAACT45650.06.45705645
CACGTCT87300.06.08277545
ACACGTC101150.05.895002445
CACACGT111750.05.315555644