FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n01_chip_root_ctrl_rep2_pol-ii.35100000093508.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n01_chip_root_ctrl_rep2_pol-ii.35100000093508.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10716138
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA17700.07.11945
ACGTCTG21650.06.4437445
CACACGT41450.05.91706345
AGAGCAC79950.05.910238745
ACACGTC32500.05.607972645
GAGCACA72750.05.567288445
ATCGGAA153750.05.414904645
AGCACAC65650.05.27825345
TCGGAAG143350.05.226979345
AAGAGCA100450.05.21927545
GATCGGA183650.05.133662745
GAAGAGC107650.05.016506745