FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l07n01_chip_root_ctrl_rep1_pol-ii.3510000009349d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l07n01_chip_root_ctrl_rep1_pol-ii.3510000009349d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5260810
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA33550.08.71843345
TCTGAAC27600.07.663133645
GTCTGAA29700.07.575846745
ACGTCTG39200.07.404353644
CTGAACT24250.06.21656845
CACGTCT47150.06.155841443
ACACGTC51700.05.65770745
GAAGAGC127950.05.152464445
GAACTCC21500.05.127918744
AACTCCA21950.05.12534545
TGAACTC24800.05.08070545
CACACGT58650.05.063950544
Produced by FastQC (version 0.11.2)