FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l06n02_input_root_ctrl_rep2_h3k18ac_06-18-17.35200000093747.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l06n02_input_root_ctrl_rep2_h3k18ac_06-18-17.35200000093747.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18661781
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA57500.018.9798749
TTCCGAT58700.018.55139710
GTGTGCT65600.016.788922
TCCGATC64950.016.7307911
GTGCTCT66300.016.5737764
TGTGCTC68550.016.3916343
CGTGTGC65800.016.1567361
TCTTCCG80550.013.886288
CCGATCT84150.013.50172112
TGCTCTT88800.012.6007995
GCTCTTC90500.012.484876
CTCTTCC111100.010.5742987
CGATCTA31250.06.11958513
CGATCTG85950.06.020534513
Produced by FastQC (version 0.11.2)