FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l06n02_chip_root_ctrl_rep3_h3k18ac_06-18-17.35200000093611.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l06n02_chip_root_ctrl_rep3_h3k18ac_06-18-17.35200000093611.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11349286
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAT25550.014.17700410
TCCGATC30150.012.3872811
CTTCCGA30950.011.7777729
TGTGCTC36200.010.2632473
CCGATCT35900.010.21523612
GTGTGCT36400.010.1467862
GTGCTCT38900.09.7244984
CGTGTGC36000.09.5720641
TCTTCCG46000.08.4639618
GCTCTTC45850.08.0014046
TGCTCTT50800.07.6670555
AGAGCGT44650.06.80167545
ATCGGAA105100.06.05741445
AAGAGCG55000.05.971588644
TCGGAAG94500.05.927493645
CGATCTG29050.05.34394513
AGCGTCG43200.05.259460445
AGATCGG144550.05.213510545
CTCTTCC83400.05.12711337
GATCGGA124850.05.11716644
Produced by FastQC (version 0.11.2)