FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l06n02_chip_root_ctrl_rep1_h3k18ac_06-18-17.35200000093556.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l06n02_chip_root_ctrl_rep1_h3k18ac_06-18-17.35200000093556.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6912059
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAT17500.019.41291410
CTTCCGA20250.017.1118839
TCCGATC23500.015.22277211
CGTGTGC23250.015.0155631
GTGCTCT24900.014.1069244
CCGATCT24900.014.095798512
GTGTGCT26650.013.5217732
TGTGCTC27250.013.0563813
TCTTCCG30700.011.4358938
GCTCTTC31100.010.9278576
TGCTCTT33900.010.55991655
CTCTTCC49550.07.7666967
ATCGGAA48800.06.63825145
CGATCTG17800.06.446360613
AGAGCGT20650.06.209631445
CGATCTA11959.094947E-126.024853713
TCGGAAG45300.05.90962345
GAGCGTC22050.05.50929745
GATCGGA58350.05.474558444
AAGAGCG26850.05.0269643
Produced by FastQC (version 0.11.2)