FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l06n01_input_root_ctrl_rep3_h3k18ac_06-18-17.3510000009378d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l06n01_input_root_ctrl_rep3_h3k18ac_06-18-17.3510000009378d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10229082
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGAAG68250.05.670568545
AGAGCAC42300.05.372566745
ATCGGAA78850.05.022405645
Produced by FastQC (version 0.11.2)