FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l05n02_chip_root_ctrl_rep3_h2az_05-26-17.35200000093599.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l05n02_chip_root_ctrl_rep3_h2az_05-26-17.35200000093599.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9353611
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA36700.09.25618445
TAGGGAA32350.09.04045245
TGTAGGG46950.08.28956245
GTGTAGG60750.07.813709345
CGTGTAG73200.07.00720545
TCGTGTA80800.06.96064945
GTCGTGT98300.05.85878444
CTTCCGA19900.05.65388739
AGGGAAA44200.05.598755445
AGAGCGT177500.05.145750545
GAGCGTC165750.05.11692345
TTCCGAT21500.05.02292110
Produced by FastQC (version 0.11.2)