FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l05n02_chip_root_ctrl_rep1_h2az_05-26-17.352000000934c0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l05n02_chip_root_ctrl_rep1_h2az_05-26-17.352000000934c0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19620651
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAT46050.013.09366110
CTTCCGA52500.011.4870919
TCCGATC54850.011.07566211
TGTGCTC60200.010.2093183
GTGTGCT59650.010.1152352
GTGCTCT61700.09.9607374
CGTGTGC62950.09.2982581
CCGATCT68600.08.75735612
TCTTCCG79950.07.7695138
GCTCTTC80150.07.47056256
TGCTCTT81800.07.43009765
TGTAGGG63150.06.98239445
TCGTGTA97950.06.5457945
GTGTAGG79000.06.350375745
GTCGTGT124750.06.31174145
TAGGGAA53900.06.260718345
GTAGGGA53300.06.246744
CGTGTAG92450.06.08351745
GAGCGTC219850.05.77130945
AGAGCGT235300.05.669625845
Produced by FastQC (version 0.11.2)