FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l05n01_chip_shoot_ctrl_rep1_h2az_05-26-17.3510000009339e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l05n01_chip_shoot_ctrl_rep1_h2az_05-26-17.3510000009339e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22807831
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGAAC127500.09.00035945
GTCTGAA152700.08.51703945
CGTCTGA171450.08.28116945
ACGTCTG207100.07.811755745
CTGAACT116700.07.42317545
TGAACTC107200.07.13647945
CACGTCT251900.06.93159845
GAACTCC87450.06.45823345
ACACGTC291000.06.41004945
CACACGT342050.06.28880545
GCACACG408850.05.343754344
AACTCCA84350.05.095045645
GAGCACA507800.05.051402645