FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l05n01_chip_root_ctrl_rep3_h2az_05-26-17.3510000009359c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l05n01_chip_root_ctrl_rep3_h2az_05-26-17.3510000009359c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9353611
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA56250.08.36033945
GTCTGAA50900.07.824481545
TCTGAAC46400.07.564961445
ACGTCTG66400.07.38734745
CACGTCT81250.06.92335745
CTGAACT42500.06.72380245
TGAACTC39400.06.3390945
ACACGTC95200.06.12157245
CACACGT107150.05.585764444
GAACTCC32900.05.471346445
GCACACG134150.05.33379845
GAGCACA165300.05.07733845
Produced by FastQC (version 0.11.2)