FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l05n01_chip_root_ctrl_rep2_h2az_05-26-17.35100000093522.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l05n01_chip_root_ctrl_rep2_h2az_05-26-17.35100000093522.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12041042
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA31500.08.1432645
ACGTCTG36300.07.06646645
ACACGTC52600.06.58777945
CACACGT67950.06.126131545
GCACACG89750.05.76630245
CACGTCT46850.05.667185344
AGAGCAC120050.05.529220645
AGCACAC96400.05.41509444
AAGAGCA142500.05.273945345
ATCGGAA229900.05.118783545
GAGCACA108950.05.101216345
Produced by FastQC (version 0.11.2)