FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l05n01_chip_root_ctrl_rep1_h2az_05-26-17.351000000934c3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l05n01_chip_root_ctrl_rep1_h2az_05-26-17.351000000934c3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19620651
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA66250.07.370163445
ACGTCTG78900.06.901470745
ACACGTC116800.06.742616745
GTCTGAA71150.06.57796745
CACGTCT102050.06.32808345
CACACGT144950.06.28695145
AGCACAC201800.05.720045645
GAGCACA231400.05.493996645
AGAGCAC254550.05.277211745
TCTGAAC69800.05.22212644
TCGGAAG435450.05.053634645
GCACACG181850.05.035984545
Produced by FastQC (version 0.11.2)