FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n02_input_root_ctrl_rep3_h3k4me3.35200000093760.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n02_input_root_ctrl_rep3_h3k4me3.35200000093760.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9264200
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA20750.06.939180445
TGTAGGG24500.06.51986445
CGTGTAG33900.05.90658745
GTGTAGG30450.05.836951745
AGAGCGT74800.05.35383245
AGCGTCG73150.05.197789745
TCGTGTA38300.05.16928245
GAGCGTC74500.05.01300544
Produced by FastQC (version 0.11.2)