FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n02_chip_root_ctrl_rep3_h3k4me3.352000000935a6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n02_chip_root_ctrl_rep3_h3k4me3.352000000935a6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12149775
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCCGAT34700.019.71049110
CTTCCGA38150.017.8700059
GTGTGCT41300.016.6255052
TGTGCTC43250.015.6150143
TCCGATC45900.015.09603111
GTGCTCT45350.014.841994
CGTGTGC47750.013.7675871
TGCTCTT52400.013.3148335
CCGATCT55400.012.62923812
TCTTCCG57900.012.3581578
GCTCTTC62250.011.3514386
CTCTTCC84600.08.8039057
CGATCTA20750.06.83047213
TAGGGAA30800.06.720078544
GTAGGGA33300.06.62093145
TGTAGGG37150.06.4192545
TCGTGTA60250.05.825118545
GTCGTGT72750.05.782902245
CGTGTAG56900.05.772684645
GTGTAGG49050.05.504013545
Produced by FastQC (version 0.11.2)