FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n02_chip_root_ctrl_rep2_h3k4me3.3520000009357f.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n02_chip_root_ctrl_rep2_h3k4me3.3520000009357f.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12566729
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA43000.020.510839
GTGCTCT44950.019.7311174
TTCCGAT45800.019.64887610
GTGTGCT45800.019.5136222
TGTGCTC46400.019.0660823
TCCGATC51200.017.44415311
TGCTCTT52400.017.2227765
CGTGTGC52600.016.7350221
TCTTCCG59250.015.1898278
GCTCTTC61450.014.5750986
CCGATCT70600.012.87387912
CTCTTCC71750.012.6378947
TAGGGAA47700.09.10305845
GTAGGGA57300.08.598845
TGTAGGG73050.08.13077645
CGATCTA20700.08.04258913
GTGTAGG91500.07.57317545
TCGTGTA119950.07.052383445
CGTGTAG109000.06.832031245
GTCGTGT146450.06.12959645
Produced by FastQC (version 0.11.2)