FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n02_chip_root_ctrl_rep1_h3k4me3.35200000093512.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n02_chip_root_ctrl_rep1_h3k4me3.35200000093512.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12225570
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCCGA40250.021.4094819
GTGCTCT42750.020.7473474
GTGTGCT42550.020.739992
TTCCGAT42050.020.65252710
TGTGCTC45100.019.4167043
TCCGATC49550.017.93413711
CGTGTGC49950.016.947251
TGCTCTT53200.016.9217075
TCTTCCG57500.015.5347698
GCTCTTC60850.015.0887966
CTCTTCC68200.013.3289247
CCGATCT74500.012.26022912
CGATCTA19550.09.55124913
GTAGGGA51850.09.4591645
TGTAGGG66050.08.617722545
TAGGGAA43000.07.691192645
GTGTAGG83800.07.24877445
CGTGTAG98550.06.48345545
TCGTGTA107350.06.392085645
AAAGAGT18900.06.30897645
Produced by FastQC (version 0.11.2)