FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n01_input_root_ctrl_rep3_h3k4me3.35100000093763.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n01_input_root_ctrl_rep3_h3k4me3.35100000093763.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9264200
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTG29450.06.952646745
CGTCTGA26650.06.501111545
GTCTGAA32050.05.686578845
AGCACAC69200.05.56011945
CACGTCT38050.05.499489345
CACACGT49000.05.097074545
GAGCACA76100.05.02617144
Produced by FastQC (version 0.11.2)