FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n01_input_root_ctrl_rep2_h3k4me3.35100000093713.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n01_input_root_ctrl_rep2_h3k4me3.35100000093713.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10276517
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTG32750.06.80210645
ACACGTC46950.06.32641745
CGTCTGA29100.06.2634245
CACACGT56900.05.53649945
CACGTCT40350.05.46469744
GTCTGAA32400.05.27822745
GAGCACA91050.05.21461245
AGCACAC80550.05.112167445
Produced by FastQC (version 0.11.2)