FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n01_chip_root_ctrl_rep3_h3k4me3.351000000935a9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n01_chip_root_ctrl_rep3_h3k4me3.351000000935a9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12149775
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCTG49950.06.53190345
CGTCTGA43400.06.42893745
ACACGTC69200.05.950483345
GTCTGAA44000.05.82987745
CACACGT80600.05.583444645
TCTGAAC41450.05.374250445
CACGTCT60800.05.36625945
GAGCACA125100.05.324043845
CTGAACT42850.05.1461545
Produced by FastQC (version 0.11.2)