FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n01_chip_root_ctrl_rep2_h3k4me3.35100000093572.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n01_chip_root_ctrl_rep2_h3k4me3.35100000093572.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12566729
Sequences flagged as poor quality0
Sequence length51
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGAAC65200.07.76486845
GTCTGAA77350.07.73785345
CGTCTGA89300.07.50868645
CTGAACT59750.07.38103645
ACGTCTG105350.07.04820645
CACGTCT124600.06.69969545
ACACGTC147050.06.16650645
GAACTCC51900.06.06959745
CACACGT165500.05.941315745
TGAACTC58600.05.606016645
ACTCCAG34500.05.478470345
AGCACAC224250.05.257726745
GCACACG209750.05.224276545
GAGCACA252650.05.058574745