FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l04n01_chip_root_ctrl_rep1_h3k4me3.35100000093515.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l04n01_chip_root_ctrl_rep1_h3k4me3.35100000093515.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12225570
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTGAA71850.08.11117745
TCTGAAC60250.08.10426445
CGTCTGA80850.07.458743645
ACGTCTG95400.06.69855145
CTGAACT55200.06.19605745
CACGTCT112000.06.14772345
CACACGT143400.06.00980745
GAACTCC54700.05.923604545
ACTCCAG33050.05.65089945
TGAACTC55100.05.553538344
ACACGTC128450.05.377578344
AGCACAC199150.05.22002545
GCACACG183150.05.06175645
AACTCCA40500.05.05588645