FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l03n02_atac_control_1h_rep3_shoot_06-13-17.35200000093314.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l03n02_atac_control_1h_rep3_shoot_06-13-17.35200000093314.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26728308
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTTATA1527450.014.54132245
TCTGACG60900.014.18520645
CTTATAC996050.013.91527645
CTCTTAT2187450.013.56835545
TAGACGG26100.013.3678515
GTACCGT41250.012.9856626
TATACCG78950.012.8301245
GTCTAGG50400.012.7762771
CTAGACA77550.012.5120274
CCTAGAC49550.012.3584733
TATACAC496950.011.97840245
GTCTATG60500.011.871461
TTATACA725350.011.85399745
TAGAGCG61100.011.60485655
ATCTGAC115100.011.53183545
TATACTG67500.011.5049775
TAAGGTG72400.011.4103235
AGTACCG55450.011.1229365
CCTATAC73750.011.1116593
GTCTTAG34300.010.9620341
Produced by FastQC (version 0.11.2)