FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l03n01_atac_control_1h_rep3_shoot_06-13-17.35100000093317.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l03n01_atac_control_1h_rep3_shoot_06-13-17.35100000093317.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26728308
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTCTC81300.019.67777441
CGGTCTC57700.019.34851640
ATGTCTC84400.016.50040841
CAGTCTC62650.015.54178940
TAGACGG24050.014.9070815
TCTTATA1471850.014.74216945
GTCTAGG51400.014.3471341
CTTATAC957350.014.03768945
CTCTTAT2107950.013.69600845
CGTGTCT57450.013.50273140
TAGAGCG62400.013.17859655
GTCTATG64300.012.9328821
CTAGACA78400.012.7754434
CCTAGAC53700.012.4761263
ACTGTCC43050.012.231218
TATACCG81450.012.18715
TATACAC476200.012.18090645
TTATACA693950.012.0471845
GTACCGT40950.011.9832746
CCTATAC77550.011.6152113
Produced by FastQC (version 0.11.2)