FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l02n01_atac_control_1h_rep1_root_06-21-17.3510000009325c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l02n01_atac_control_1h_rep1_root_06-21-17.3510000009325c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9861973
Sequences flagged as poor quality0
Sequence length51
%GC65

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATACT1754.8426955E-815.4371571
TATACAC226650.015.40260945
CTAGACA1553.616884E-614.5188294
CTAAGAC1251.379948E-414.40267853
ATACACA148550.013.43968845
TTATACA320650.013.1124545
TGTATAA2552.838351E-812.35210711
GACTAGA1651.0451048E-412.27189911
TATAGGA2106.314058E-611.7879682
TATAAGA2502.9209878E-711.6992113
ACTTAAC1751.8082513E-411.5706478
TTAGGTT1400.005253661411.2520924
CTAACCC2707.8740413E-710.8353493
ATTAGCC2759.972555E-710.6383433
TAAGAGA2751.0005133E-610.63564615
GTCTAGA1700.001831073410.5941271
TCGTATG8100.010.55484310
CCCTTAG1500.00874885310.5058431
ATAAGAG3002.696088E-710.49929114
TAGGACC3053.3721153E-710.329794
Produced by FastQC (version 0.11.2)