FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l01n02_atac_control_1h_rep1_shoot_06-21-17.35200000093208.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l01n02_atac_control_1h_rep1_shoot_06-21-17.35200000093208.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46107762
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC1041400.014.69845545
TATACAC508600.013.63143445
TAGACGG39450.013.5259275
GTCTAGG84000.013.1860491
TTATACA790700.012.76093745
TCTTATA1525550.012.610645
GTACCGT60500.012.1755476
TATACTG120800.011.9208975
TATACCG121700.011.8877745
TCTGACG81650.011.66233945
GTATAGG122450.011.5622611
GTCTATG92150.011.55941
CCTAGAC81250.011.4870273
CTAGACA123600.011.0911934
ACTGTGC82400.010.9421478
GTCTTAG67700.010.8522431
GTATAAG118350.010.7740781
ACTGTCC68150.010.708548
TAGAGCG91800.010.7010435
CTCTTAT1970300.010.69832545
Produced by FastQC (version 0.11.2)