FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l01n02_atac_control_1h_rep1_shoot_06-13-17.35200000093215.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l01n02_atac_control_1h_rep1_shoot_06-13-17.35200000093215.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31820348
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC892950.015.0995445
TAGACGG27650.014.7759085
TCTTATA1346700.013.92864245
GTCTAGG57500.013.35930251
CCTAGAC52700.013.1761033
TCTGACG59950.013.16980745
TATACAC439900.012.93409745
TTATACA662600.012.61904145
CTAGACA82900.012.4691934
CTCTTAT1809450.012.45953145
TATACCG86450.012.29250055
GTCTATG68700.012.2214941
GTACCGT44600.012.2115846
TATACTG91800.011.7463455
CCTATAC91550.011.5112063
ACTGTCC42700.011.4983458
GTCTTAG49900.011.4559891
GTATAGG87800.011.3431461
TAAGGTG80850.011.2109985
CTATACT89900.011.1009414
Produced by FastQC (version 0.11.2)