FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l01n01_atac_control_1h_rep2_shoot_06-13-17.35100000093232.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l01n01_atac_control_1h_rep2_shoot_06-13-17.35100000093232.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92435876
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG87750.014.6930645
GTCTAGG173850.014.3966251
CTTATAC3153550.014.15653545
TATACAC1514250.013.63813145
TATACCG244250.012.9249255
TTATACA2282100.012.89397945
GTCTATG208600.012.6025711
CTAGACA251300.012.4640644
CCTAGAC169500.012.4521983
TAGAGCG199800.012.3880255
GTACCGT143000.012.3201316
TCTTATA4529500.012.3089845
TATACTG237550.012.1243895
TACACCG159450.012.0937565
GTATAGG252750.011.9150411
CCTATAC258700.011.8726893
ACTGTCC154150.011.7201638
ACTGAGC286350.011.6914238
AGTACCG181950.011.6865055
ACTGTGC171550.011.5806168
Produced by FastQC (version 0.11.2)