FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l01n01_atac_control_1h_rep1_shoot_06-21-17.3510000009320b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l01n01_atac_control_1h_rep1_shoot_06-21-17.3510000009320b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46107762
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG44050.014.2515595
GTCTAGG85850.013.9740251
CTTATAC1159150.013.8063945
TATACAC565250.012.9656445
GTCTATG100600.012.6411061
TATACTG119850.012.5788485
CCTAGAC80750.012.400243
GTACCGT63650.012.3725216
TAGAGCG94450.012.2690075
TATACCG122650.012.1449175
TTATACA875450.012.10473345
CTAGACA123150.012.05934
ACTGTCC69550.012.0015698
TCTTATA1683000.011.86286745
GTATAGG124350.011.6385741
AGTACCG84650.011.5097285
CCTATAC128050.011.4924013
ACTGAGC133100.011.3255168
GACTGTG49300.011.226637
TAAGGTG110100.011.1790295
Produced by FastQC (version 0.11.2)