FastQCFastQC Report
Mon 3 Jul 2017
CA4RDACXX_l01n01_atac_control_1h_rep1_shoot_06-13-17.35100000093218.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCA4RDACXX_l01n01_atac_control_1h_rep1_shoot_06-13-17.35100000093218.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31820348
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTAGG58200.014.8119341
TAGACGG29100.014.7686185
CTTATAC999200.014.09788445
TCTTATA1491850.013.12547445
CCTAGAC55900.012.6797053
TAGAGCG64900.012.6199075
TATACCG92600.012.6111835
GTACCGT44550.012.5757746
CTAGACA87800.012.480874
GTCTATG70500.012.3873561
TATACAC489950.012.24380145
ACTGAGC92550.011.8875488
TTATACA739300.011.88361845
TATACTG91150.011.873755
CTCTTAT2006150.011.77017545
GTCTTAG48800.011.7152051
CCTATAC98450.011.6335553
TAAGGTG79200.011.5345415
AGTACCG56300.011.5102195
GTATAGG86500.011.4751521
Produced by FastQC (version 0.11.2)