FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l08n01_ogla_73.3510000008cf96.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l08n01_ogla_73.3510000008cf96.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23872333
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG132200.018.0424651
CTATACT169400.016.6830754
TATACTG136650.016.0234385
CCTATAC127850.015.8635253
GTATATA277650.014.1182181
TAGACTG80450.013.4608715
TATACCG80950.013.4364035
CCCTATA123600.013.1813552
GTATAAG108100.013.0982771
TAATACT162100.013.0977624
TATACTA219450.012.986145
GTATTAT163100.012.9054571
TATAGGG130100.012.814872
GTATTAG102600.012.7352931
GTATAGA114100.012.7009971
TCTATAC111500.012.4388593
ATAATAC155400.012.4093093
TATATAC280850.012.32893853
ATTATAC156150.012.2280353
TTATACT167300.012.2080174
Produced by FastQC (version 0.11.2)