FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l07n02_ogla_88.3520000008cd6e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l07n02_ogla_88.3520000008cd6e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18182813
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG115500.016.820035
GTATTGG200850.015.3724291
GTATATA239250.015.1486361
CCTATAC86250.014.81453
GTATAGG81500.014.8039311
GTATAAG85150.014.7272021
GTATTAG90350.013.8270191
GTATTAT135000.013.7224551
TATACCG66650.013.6831645
TTATACT137350.013.5909354
TATTGGG220850.013.550152
GTATAGA97350.013.46711
TAATACT145250.013.2768574
TACACCG59900.013.2426555
TAGACTG59450.013.1032015
CTATACT120200.013.0010024
ATTATAC126850.012.8439153
GTATATG160800.012.7909511
GGTGCGT157000.012.7064527
GTGCGTT151050.012.57782658
Produced by FastQC (version 0.11.2)