FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l07n01_ogla_84.3510000008ce60.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l07n01_ogla_84.3510000008ce60.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14027871
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG91950.015.8063495
GTATATA202500.014.3830881
GTATTGG127500.013.6018921
TATACCG46750.013.5123815
GTATAGG61700.013.4762651
TTATACT112800.013.3909814
GTATAAG63350.013.1252661
ACTGTGC61600.013.0302858
GTATAAT107200.012.9864221
TATACAG81650.012.9139355
GTATAGA80150.012.80462551
CTATACT94600.012.8039324
GTATTAT109200.012.3569811
TAGACTG44850.012.2844965
TCTATAC72500.012.1862713
GTATTAG73950.011.8863961
TACACTG65500.011.7472325
TACACCG46100.011.6423155
ATAATAC108900.011.6024483
TATTGGG146200.011.5669032
Produced by FastQC (version 0.11.2)