FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l06n01_ogla_97.3510000008ccf6.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l06n01_ogla_97.3510000008ccf6.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22126982
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG138600.016.2441485
TATACCG73300.015.0984985
GTATATA292550.014.861811
TTATACT164800.014.2960834
TATACAG132150.014.2693825
GTATAGG102850.014.2297441
GTATAAG99500.014.088011
CCTATAC97150.014.0323933
GTATAGA120450.013.4129031
CTATACT137850.013.4040334
GTATTGG204900.013.3576841
TAATACT174000.013.2672124
TCTATAC107650.013.0608173
ATACTGT141450.013.027726
TAGACTG69950.012.9696265
GTATTAT166100.012.7017631
ATTATAC155050.012.6829783
GTATTAA141500.012.6600551
TACACTG104550.012.6299795
TAGACAG83650.012.4354075
Produced by FastQC (version 0.11.2)