FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l05n02_ogla_103.3520000008ce00.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l05n02_ogla_103.3520000008ce00.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16297591
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG76150.019.273561
TATACTG102050.018.4772035
TATACCG50400.017.2456385
GTATAAG75900.016.8338661
CCTAGAC55000.016.5808433
TTATACT118400.015.1635254
TACACCG56200.015.1277895
GTATTGG132550.015.1218911
GTCTAGG59800.015.091271
TACACTG74900.014.9020075
CCTATAC75350.014.8133293
CTATACT105650.014.7906234
TATACAG94950.014.4564475
TAGACTG55600.014.43678955
TAGACGG26050.014.4038335
GTGTAGG70100.014.3645241
ACTGTCC52300.014.3476518
GTATAGA91150.014.3301051
GTCTTAG51900.014.2767921
TACACAG69900.014.2012915
Produced by FastQC (version 0.11.2)