FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l04n01_ogla_107.3510000008cef4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l04n01_ogla_107.3510000008cef4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28594662
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG172850.017.2563975
TATACCG88550.016.9495585
TACACTG119150.016.8220275
GTATTGG261650.015.9431791
GTATAAG133250.015.6173751
ACTGTGC116050.015.4291668
CCTATAC119200.014.8239723
GTATAGG121100.014.6733281
GTCTAGG95700.014.5960921
GTATATA380300.014.2547781
CTATACT180100.014.2158524
TACACCG88250.014.2085295
GTATTAG138950.014.1560791
TATACAG159600.014.0465295
GTGTAGG112700.013.9963671
TAGACTG90150.013.909075
TACACAG118300.013.8514185
TATTGGG281750.013.4373462
TAGACAG99150.013.2692675
GGTGCGT194300.013.2486847
Produced by FastQC (version 0.11.2)