FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l04n01_ogla_106.3510000008cf7c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l04n01_ogla_106.3510000008cf7c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29550054
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG173100.017.01145
GTATTGG254050.015.727981
GTATAAG124450.015.3089571
GTATATA377700.015.1200641
CCTATAC119700.014.6426713
CTATACT182050.014.6372774
GTATAGG125600.014.5257221
TATACAG157800.014.4771665
TATACCG88000.014.4103345
TACACTG126600.014.2934395
GTGTAGG121000.014.2926291
CTACACT124100.013.8938614
CCTAGAC86450.013.8459783
TAGACAG98950.013.7756335
TTATACT217300.013.7055334
TAGACTG92850.013.6576145
TACACCG91650.013.5773275
GTATTAG138350.013.4961391
CCTACAC115050.013.4591953
TACACAG119650.013.3771215
Produced by FastQC (version 0.11.2)