FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l03n02_ogla_118.3520000008cf29.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l03n02_ogla_118.3520000008cf29.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24471567
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG154450.016.6686615
GTATTGG212700.015.4312691
GTATAGG104200.015.407781
GTATATA321600.015.065211
TACACTG115050.014.9455275
GTATAAG111000.014.8062191
CTATACT153200.014.57230954
TATACCG70500.014.5530475
CGCCGTA127650.014.51373794-95
TATACAG131800.014.4156385
TTATACT185750.014.3457534
GTATTAG121200.014.0304461
GTATTAT175300.013.5210281
TAATACT196250.013.3603764
TACACCG74700.013.2261075
GTCTAGG85150.013.2207091
GTATAAT176500.013.2138041
TAGACTG76000.013.1248685
CCTATAC104050.012.9647913
GTATAGA128000.012.9510961
Produced by FastQC (version 0.11.2)