FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l03n01_ogla_118.3510000008cf2c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l03n01_ogla_118.3510000008cf2c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24471567
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG157050.017.631245
GTATTGG211500.015.1390171
CTATACT156650.015.0689394
TAGACAG85800.015.0014875
GTATAGG106100.014.7308791
TACACTG113400.014.6172155
GTATATA325100.014.5542741
CCTATAC107050.014.5534253
TACACCG78000.014.55310255
GTATAAG108000.014.47172451
TATACCG70900.014.3357315
TTATACT186400.014.2182134
ACTGTGC108650.014.1633158
GTATTAT180900.013.9707981
TATACAG140000.013.9093915
GTGTAGG100650.013.8293571
GTATAGA133200.013.3744271
ACTGCGC53250.013.2897348
TAATACT190650.013.2286174
GTCTAGG86800.013.1352891
Produced by FastQC (version 0.11.2)