FastQCFastQC Report
Mon 15 May 2017
C9LUHACXX_l03n01_ogla_116.3510000008d01b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUHACXX_l03n01_ogla_116.3510000008d01b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29367821
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG183150.017.4263615
TATACCG87950.016.8485725
CTATACT180750.015.5821784
GTATAGG123850.015.18965151
GTATAAG132300.015.1530911
TATACAG159350.015.0218295
TTATACT220100.014.3284694
GTATTGG243150.014.3016271
GTATAGA147400.014.1809021
GTATTAT210950.014.1425841
ACTGTGC122550.013.9131038
GTATTAG146450.013.8836311
GTATATA383900.013.6862871
TAATACT238600.013.6554324
CCTATAC126800.013.5975933
ATAATAC215800.013.3821793
TCTATAC148700.013.3518063
TAGACAG101500.013.1955485
TAGACTG92550.013.1886715
GTATAAT213850.013.0622111
Produced by FastQC (version 0.11.2)