FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l08n01_99.35100000073a49.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l08n01_99.35100000073a49.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93041624
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG678200.020.9390815
CTATACT732050.019.9247914
TAATACT951550.019.7160634
TTATACT926150.018.8465024
TATACCG307000.017.6519015
TATACAG616950.017.598295
CCTATAC511700.017.273873
TAGACTG329200.017.2694515
ATAATAC819750.017.005343
GTATTAT819650.016.8418141
GTATAGG486850.016.8117071
GTATTAG511800.016.326281
ACTGTGC449050.016.319998
ATTATAC812800.016.2040983
TAGACAG316900.016.1112945
ATACTGT725450.016.0270126
TACACTG466650.015.85697655
TCTATAC576500.015.6865093
TAAGACT423400.015.5477334
GTATAAT837950.015.4876051
Produced by FastQC (version 0.11.2)