FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l08n01_143.35100000073ce7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l08n01_143.35100000073ce7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30114336
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT215950.020.2562714
TATACTG191950.018.9534075
GTATAGG164050.018.3008141
CCTATAC175150.018.0059533
TTATACT239350.016.8868714
TAGACTG101300.016.2692175
TATACTA304850.015.9536625
TACACTG144650.015.6948115
GTATTAT219400.015.5676061
ACTGTGC139000.015.4445518
TAATACT242950.015.2681794
TATACAG190350.015.1704115
ATTATAC214600.015.050033
GTATATA427100.014.692741
TATACCG96800.014.6704185
GTATTAG140050.014.5513641
TCTATAC153800.014.3908923
CCCTATA159450.014.2085292
TATACTC209700.014.2008955
ATAATAC219150.014.0223553
Produced by FastQC (version 0.11.2)