FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n02_52.35200000073a7c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n02_52.35200000073a7c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21882260
Sequences flagged as poor quality0
Sequence length101
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG154650.022.5617165
CTATACT194100.021.1855354
TAATACT303450.020.9926134
TTATACT278500.020.3811174
TACACTG114400.019.8622255
ATACTGT167900.019.636936
ACTGTGC96100.019.378438
TAGACTG63200.019.029595
CTACACT124350.018.9620274
TAGACAG81400.018.862715
TTACACT168150.018.7441394
GTATTGG223650.018.4772721
GTATAAT247800.018.4612351
TAAGGCT94650.018.3324764
TGTACTG168200.018.2571325
CTAGACT80850.018.2276444
TATACAG159150.018.070695
TAACACT167450.017.914024
AATACTG161900.017.851835
CCAGGAC59550.017.723113
Produced by FastQC (version 0.11.2)