FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n02_43.35200000073c44.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n02_43.35200000073c44.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41678225
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG241500.021.4630741
CTATACT342750.020.7906954
CCTATAC264950.019.2890223
TATACTG265300.018.6883535
TAATACT355550.016.9402874
TATACTA487500.016.7327235
ACTGTGC196200.016.6588238
TTATACT357000.016.258944
GTATTAT326250.016.2228531
ATAATAC316700.016.1671453
GTATATA630250.015.9354241
TATAGGG243150.015.8022772
TAGACTG145400.015.6274255
TCTATAC225850.015.6188663
GTATAAT329550.015.4832071
TATACAG258450.015.468335
CCCTATA254950.015.4066282
ATTATAC323850.015.2230113
GTATAAG194700.015.1428721
ATACTGT287600.014.8833696
Produced by FastQC (version 0.11.2)