FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n02_217.35200000073a02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n02_217.35200000073a02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54162755
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG268200.018.6696871
CTATACT366550.017.44314
TATACTG329800.017.1949125
TATACCG176000.016.0969545
GTATATA707700.015.1249441
CCTATAC284950.015.0150553
GTATTAT379100.014.7886141
TAATACT404900.014.2764564
GTATAAT383900.014.2444991
TCTATAC264350.014.1889663
TATACAG304150.014.1283265
ACTGTGC237150.014.1023948
TTATACT404900.014.0064244
TATACTA510550.013.6305355
ATAATAC375700.013.5772443
ATTATAC373450.013.4426383
GTATAGA278100.013.2344971
GTATTAG249150.012.978231
TACACCG168550.012.944765
TACACTG245800.012.9376195
Produced by FastQC (version 0.11.2)