FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n01_82.35100000073cb0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n01_82.35100000073cb0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27421880
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG212650.021.9083145
CTATACT247100.020.603274
ACTGTGC123850.020.1336128
GTATAGG165700.019.3250661
TTATACT319700.018.5686974
TAGACTG90800.018.514965
TACACTG137150.018.2482075
TAATACT319350.017.7265174
TATACCG89150.017.4726125
TACTGTG146750.016.7643977
TAGACAG89500.016.7144815
CTACACT132500.016.70264
CTGTGCG57900.016.5703339
ATACTGT226000.016.4745886
ACTGTGT147350.016.2457148
CCTATAC173300.016.2234943
GACTGTG77600.016.2188637
TAAGACT136950.015.9864844
TCTATAC196350.015.9395363
CTGTGCA195750.015.69869
Produced by FastQC (version 0.11.2)