FastQCFastQC Report
Tue 20 Dec 2016
C9LUFACXX_l07n01_6.35100000073ae9.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC9LUFACXX_l07n01_6.35100000073ae9.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33987718
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG208800.017.5134455
TTATACT271500.015.0084514
TATACAG204000.014.8991395
TATACCG109250.014.21475
GTATATA468350.014.2018191
CTATACT217250.014.1655564
GTATTGG251950.014.105021
TAATACT273950.014.0421024
GTATAGG150400.013.9940161
GTATTAT257550.013.9643531
TACACTG157500.013.5688595
ATTATAC243050.013.4048393
GTATTAG163050.013.3453861
ATAATAC251200.013.3291533
TACACCG106550.013.2823285
CCTATAC149100.013.2191513
GTATAAT255400.013.0773841
ACTGTGC145300.013.075368
TAGACTG110450.012.9853175
GTATAGA179400.012.7382311
Produced by FastQC (version 0.11.2)